X-30668045-T-C
Variant summary
Our verdict is Benign. Variant got -21 ACMG points: 0P and 21B. BP4_StrongBP6_Very_StrongBP7BS1BS2
The NM_001205019.2(GK):āc.186T>Cā(p.His62His) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000718 in 1,131,463 control chromosomes in the GnomAD database, including 2 homozygotes. There are 208 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (ā ā ).
Frequency
Consequence
NM_001205019.2 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -21 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00359 AC: 405AN: 112770Hom.: 0 Cov.: 23 AF XY: 0.00330 AC XY: 115AN XY: 34900
GnomAD3 exomes AF: 0.00120 AC: 220AN: 183069Hom.: 0 AF XY: 0.000886 AC XY: 60AN XY: 67685
GnomAD4 exome AF: 0.000401 AC: 408AN: 1018639Hom.: 2 Cov.: 22 AF XY: 0.000301 AC XY: 93AN XY: 308655
GnomAD4 genome AF: 0.00358 AC: 404AN: 112824Hom.: 0 Cov.: 23 AF XY: 0.00329 AC XY: 115AN XY: 34964
ClinVar
Submissions by phenotype
not provided Benign:2
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GK-related disorder Benign:1
This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at