X-50069947-A-G
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6_ModerateBS1BS2
The NM_001127898.4(CLCN5):āc.232A>Gā(p.Ile78Val) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000356 in 1,207,469 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 24 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (ā ).
Frequency
Consequence
NM_001127898.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0000268 AC: 3AN: 111739Hom.: 0 Cov.: 22 AF XY: 0.0000295 AC XY: 1AN XY: 33935
GnomAD3 exomes AF: 0.0000767 AC: 14AN: 182568Hom.: 0 AF XY: 0.000119 AC XY: 8AN XY: 67174
GnomAD4 exome AF: 0.0000365 AC: 40AN: 1095676Hom.: 0 Cov.: 29 AF XY: 0.0000637 AC XY: 23AN XY: 361262
GnomAD4 genome AF: 0.0000268 AC: 3AN: 111793Hom.: 0 Cov.: 22 AF XY: 0.0000294 AC XY: 1AN XY: 33999
ClinVar
Submissions by phenotype
not provided Benign:1
Likely benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Jun 13, 2022 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at