X-53539792-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 3P and 2B. PM2PP2BP4_Moderate
The NM_031407.7(HUWE1):c.11497G>A(p.Gly3833Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000248 in 1,208,828 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 1 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. 12/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin ClinVar.
Frequency
Consequence
NM_031407.7 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
HUWE1 | NM_031407.7 | c.11497G>A | p.Gly3833Arg | missense_variant | 75/84 | ENST00000262854.11 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
HUWE1 | ENST00000262854.11 | c.11497G>A | p.Gly3833Arg | missense_variant | 75/84 | 1 | NM_031407.7 | P2 |
Frequencies
GnomAD3 genomes ? AF: 0.00000890 AC: 1AN: 112319Hom.: 0 Cov.: 23 AF XY: 0.00 AC XY: 0AN XY: 34465
GnomAD3 exomes AF: 0.0000112 AC: 2AN: 178263Hom.: 0 AF XY: 0.0000158 AC XY: 1AN XY: 63147
GnomAD4 exome AF: 0.00000182 AC: 2AN: 1096509Hom.: 0 Cov.: 30 AF XY: 0.00000276 AC XY: 1AN XY: 361961
GnomAD4 genome ? AF: 0.00000890 AC: 1AN: 112319Hom.: 0 Cov.: 23 AF XY: 0.00 AC XY: 0AN XY: 34465
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at