X-71324564-GTTTTTTTTT-GTTTTTT

Variant summary

Our verdict is Uncertain significance. The variant received 0 ACMG points: 0P and 0B.

No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

Frequency

Genomes: 𝑓 0.00057 ( 1 hom., 1 hem., cov: 0)

Consequence

Unknown

Scores

Not classified

Clinical Significance

Not reported in ClinVar

Conservation

PhyloP100: 0.166

Publications

0 publications found
Variant links:

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ACMG classification

Our verdict: Uncertain_significance. The variant received 0 ACMG points.

Variant Effect in Transcripts

 

RefSeq Transcripts

Selected
GeneTranscriptTagsHGVScHGVSpEffectExon RankProteinUniProt

Ensembl Transcripts

Selected
GeneTranscriptTagsHGVScHGVSpEffectExon RankProteinUniProt

Frequencies

GnomAD3 genomes
AF:
0.000573
AC:
44
AN:
76816
Hom.:
1
Cov.:
0
show subpopulations
Gnomad AFR
AF:
0.00189
Gnomad AMI
AF:
0.00
Gnomad AMR
AF:
0.000507
Gnomad ASJ
AF:
0.00
Gnomad EAS
AF:
0.00
Gnomad SAS
AF:
0.00
Gnomad FIN
AF:
0.000660
Gnomad MID
AF:
0.00
Gnomad NFE
AF:
0.0000243
Gnomad OTH
AF:
0.00
We have no GnomAD4 exomes data on this position. Probably position not covered by the project.
GnomAD4 genome
AF:
0.000573
AC:
44
AN:
76792
Hom.:
1
Cov.:
0
AF XY:
0.0000686
AC XY:
1
AN XY:
14572
show subpopulations
African (AFR)
AF:
0.00189
AC:
39
AN:
20624
American (AMR)
AF:
0.000506
AC:
3
AN:
5925
Ashkenazi Jewish (ASJ)
AF:
0.00
AC:
0
AN:
2136
East Asian (EAS)
AF:
0.00
AC:
0
AN:
2447
South Asian (SAS)
AF:
0.00
AC:
0
AN:
1542
European-Finnish (FIN)
AF:
0.000660
AC:
1
AN:
1515
Middle Eastern (MID)
AF:
0.00
AC:
0
AN:
100
European-Non Finnish (NFE)
AF:
0.0000244
AC:
1
AN:
41066
Other (OTH)
AF:
0.00
AC:
0
AN:
915
Allele Balance Distribution
Red line indicates average allele balance
Average allele balance: 0.521
Heterozygous variant carriers
0
3
5
8
10
13
0.00
0.20
0.40
0.60
0.80
0.95
Allele balance

Age Distribution

Genome Het
Variant carriers
0
2
4
6
8
10
<30
30-35
35-40
40-45
45-50
50-55
55-60
60-65
65-70
70-75
75-80
>80
Age
Alfa
AF:
0.00
Hom.:
1006

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.9

Name
Calibrated prediction
Score
Prediction
PhyloP100
0.17

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

Other links and lift over

dbSNP: rs34793613; hg19: chrX-70544414; API