X-71324564-GTTTTTTTTT-GTTTTTT

Variant summary

Our verdict is Uncertain significance. The variant received 0 ACMG points: 0P and 0B.

No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

Frequency

Genomes: 𝑓 0.00057 ( 1 hom., 1 hem., cov: 0)

Consequence

Unknown

Scores

Not classified

Clinical Significance

Not reported in ClinVar

Conservation

PhyloP100: 0.166

Publications

0 publications found
Variant links:

Genome browser will be placed here

ACMG classification

Our verdict: Uncertain_significance. The variant received 0 ACMG points.

Variant Effect in Transcripts

 

RefSeq Transcripts

Sel.
GeneTranscriptTagsHGVScHGVSpEffectExon RankProteinUniProt

There are no transcript annotations for this variant.

Ensembl Transcripts

Sel.
GeneTranscriptTagsHGVScHGVSpEffectExon RankProteinUniProt

There are no transcript annotations for this variant.

Frequencies

GnomAD3 genomes
AF:
0.000573
AC:
44
AN:
76816
Hom.:
1
Cov.:
0
show subpopulations
Gnomad AFR
AF:
0.00189
Gnomad AMI
AF:
0.00
Gnomad AMR
AF:
0.000507
Gnomad ASJ
AF:
0.00
Gnomad EAS
AF:
0.00
Gnomad SAS
AF:
0.00
Gnomad FIN
AF:
0.000660
Gnomad MID
AF:
0.00
Gnomad NFE
AF:
0.0000243
Gnomad OTH
AF:
0.00
We have no GnomAD4 exomes data on this position. Probably position not covered by the project.
GnomAD4 genome
AF:
0.000573
AC:
44
AN:
76792
Hom.:
1
Cov.:
0
AF XY:
0.0000686
AC XY:
1
AN XY:
14572
show subpopulations
African (AFR)
AF:
0.00189
AC:
39
AN:
20624
American (AMR)
AF:
0.000506
AC:
3
AN:
5925
Ashkenazi Jewish (ASJ)
AF:
0.00
AC:
0
AN:
2136
East Asian (EAS)
AF:
0.00
AC:
0
AN:
2447
South Asian (SAS)
AF:
0.00
AC:
0
AN:
1542
European-Finnish (FIN)
AF:
0.000660
AC:
1
AN:
1515
Middle Eastern (MID)
AF:
0.00
AC:
0
AN:
100
European-Non Finnish (NFE)
AF:
0.0000244
AC:
1
AN:
41066
Other (OTH)
AF:
0.00
AC:
0
AN:
915
Allele Balance Distribution
Red line indicates average allele balance
Average allele balance: 0.521
Heterozygous variant carriers
0
3
5
8
10
13
0.00
0.20
0.40
0.60
0.80
0.95
Allele balance

Age Distribution

Genome Het
Variant carriers
0
2
4
6
8
10
<30
30-35
35-40
40-45
45-50
50-55
55-60
60-65
65-70
70-75
75-80
>80
Age
Alfa
AF:
0.00
Hom.:
1006

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.9

Name
Calibrated prediction
Score
Prediction
PhyloP100
0.17

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

MaxEntScan Visualizer can be used to analyze the impact of this mutation on the neighboring sequence.

Publications

Other links and lift over

dbSNP: rs34793613; hg19: chrX-70544414; API
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.