X-71324564-GTTTTTTTTT-GTTTTTTTTTTTTTTTT

Variant summary

Our verdict is Uncertain significance. The variant received 0 ACMG points: 0P and 0B.

No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

Frequency

Genomes: 𝑓 0.000039 ( 0 hom., 0 hem., cov: 0)

Consequence

Unknown

Scores

Not classified

Clinical Significance

Not reported in ClinVar

Conservation

PhyloP100: 0.166

Publications

0 publications found
Variant links:

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ACMG classification

Our verdict: Uncertain_significance. The variant received 0 ACMG points.

Variant Effect in Transcripts

 

RefSeq Transcripts

Selected
GeneTranscriptTagsHGVScHGVSpEffectExon RankProteinUniProt

There are no transcript annotations for this variant.

Ensembl Transcripts

Selected
GeneTranscriptTagsHGVScHGVSpEffectExon RankProteinUniProt

There are no transcript annotations for this variant.

Frequencies

GnomAD3 genomes
AF:
0.0000391
AC:
3
AN:
76820
Hom.:
0
Cov.:
0
show subpopulations
Gnomad AFR
AF:
0.00
Gnomad AMI
AF:
0.00
Gnomad AMR
AF:
0.00
Gnomad ASJ
AF:
0.00
Gnomad EAS
AF:
0.00
Gnomad SAS
AF:
0.00
Gnomad FIN
AF:
0.000658
Gnomad MID
AF:
0.00
Gnomad NFE
AF:
0.0000487
Gnomad OTH
AF:
0.00
We have no GnomAD4 exomes data on this position. Probably position not covered by the project.
GnomAD4 genome
AF:
0.0000391
AC:
3
AN:
76820
Hom.:
0
Cov.:
0
AF XY:
0.00
AC XY:
0
AN XY:
14572
show subpopulations
African (AFR)
AF:
0.00
AC:
0
AN:
20610
American (AMR)
AF:
0.00
AC:
0
AN:
5920
Ashkenazi Jewish (ASJ)
AF:
0.00
AC:
0
AN:
2136
East Asian (EAS)
AF:
0.00
AC:
0
AN:
2457
South Asian (SAS)
AF:
0.00
AC:
0
AN:
1560
European-Finnish (FIN)
AF:
0.000658
AC:
1
AN:
1519
Middle Eastern (MID)
AF:
0.00
AC:
0
AN:
114
European-Non Finnish (NFE)
AF:
0.0000487
AC:
2
AN:
41071
Other (OTH)
AF:
0.00
AC:
0
AN:
911
Allele Balance Distribution
Red line indicates average allele balance
Average allele balance: 0.475
Heterozygous variant carriers
0
0
1
1
2
2
0.00
0.20
0.40
0.60
0.80
0.95
Allele balance

Age Distribution

Genome Het
Variant carriers
0
2
4
6
8
10
<30
30-35
35-40
40-45
45-50
50-55
55-60
60-65
65-70
70-75
75-80
>80
Age
Alfa
AF:
0.00
Hom.:
1006

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.9

Name
Calibrated prediction
Score
Prediction
PhyloP100
0.17

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

Other links and lift over

dbSNP: rs34793613; hg19: chrX-70544414; API