X-71616899-C-T
Variant summary
Our verdict is Benign. Variant got -11 ACMG points: 0P and 11B. BP4_StrongBP6_ModerateBP7BS2
The NM_001504.2(CXCR3):c.573G>A(p.Ser191Ser) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000252 in 1,205,023 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 87 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★).
Frequency
Consequence
NM_001504.2 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -11 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
CXCR3 | ENST00000373693.4 | c.573G>A | p.Ser191Ser | synonymous_variant | Exon 2 of 2 | 1 | NM_001504.2 | ENSP00000362797.3 | ||
CXCR3 | ENST00000373691.4 | c.714G>A | p.Ser238Ser | synonymous_variant | Exon 2 of 2 | 1 | ENSP00000362795.4 |
Frequencies
GnomAD3 genomes AF: 0.000188 AC: 21AN: 111797Hom.: 0 Cov.: 23 AF XY: 0.000206 AC XY: 7AN XY: 34031
GnomAD3 exomes AF: 0.000314 AC: 55AN: 175426Hom.: 0 AF XY: 0.000244 AC XY: 15AN XY: 61492
GnomAD4 exome AF: 0.000259 AC: 283AN: 1093226Hom.: 0 Cov.: 32 AF XY: 0.000223 AC XY: 80AN XY: 359316
GnomAD4 genome AF: 0.000188 AC: 21AN: 111797Hom.: 0 Cov.: 23 AF XY: 0.000206 AC XY: 7AN XY: 34031
ClinVar
Submissions by phenotype
not provided Benign:1
CXCR3: BP4, BP7 -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at