chr11-64559204-G-A
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBS1BS2
The NM_018484.4(SLC22A11):c.463G>A(p.Val155Met) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00181 in 1,611,204 control chromosomes in the GnomAD database, including 38 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. V155G) has been classified as Likely benign.
Frequency
Consequence
NM_018484.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
SLC22A11 | NM_018484.4 | c.463G>A | p.Val155Met | missense_variant | 2/10 | ENST00000301891.9 | |
SLC22A11 | NM_001307985.2 | c.463G>A | p.Val155Met | missense_variant | 2/8 | ||
SLC22A11 | XM_011545167.2 | c.99-2800G>A | intron_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
SLC22A11 | ENST00000301891.9 | c.463G>A | p.Val155Met | missense_variant | 2/10 | 1 | NM_018484.4 | P1 |
Frequencies
GnomAD3 genomes AF: 0.00800 AC: 1217AN: 152040Hom.: 13 Cov.: 31
GnomAD3 exomes AF: 0.00224 AC: 559AN: 249080Hom.: 7 AF XY: 0.00156 AC XY: 210AN XY: 134580
GnomAD4 exome AF: 0.00116 AC: 1692AN: 1459046Hom.: 25 Cov.: 31 AF XY: 0.00112 AC XY: 810AN XY: 725540
GnomAD4 genome AF: 0.00805 AC: 1225AN: 152158Hom.: 13 Cov.: 31 AF XY: 0.00762 AC XY: 567AN XY: 74366
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at