chr15-49508280-C-A
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_152647.3(FAM227B):c.943G>T(p.Gly315Cys) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000155 in 1,610,916 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. G315V) has been classified as Uncertain significance.
Frequency
Consequence
NM_152647.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
FAM227B | NM_152647.3 | c.943G>T | p.Gly315Cys | missense_variant | 11/16 | ENST00000299338.11 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
FAM227B | ENST00000299338.11 | c.943G>T | p.Gly315Cys | missense_variant | 11/16 | 2 | NM_152647.3 | P1 | |
FAM227B | ENST00000561064.5 | c.841G>T | p.Gly281Cys | missense_variant | 10/11 | 1 | |||
FAM227B | ENST00000559351.1 | n.15G>T | non_coding_transcript_exon_variant | 1/2 | 3 |
Frequencies
GnomAD3 genomes AF: 0.0000986 AC: 15AN: 152056Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000241 AC: 6AN: 248958Hom.: 0 AF XY: 0.0000148 AC XY: 2AN XY: 134694
GnomAD4 exome AF: 0.00000686 AC: 10AN: 1458742Hom.: 0 Cov.: 31 AF XY: 0.00000827 AC XY: 6AN XY: 725718
GnomAD4 genome AF: 0.0000986 AC: 15AN: 152174Hom.: 0 Cov.: 32 AF XY: 0.0000807 AC XY: 6AN XY: 74382
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Jul 16, 2021 | The c.943G>T (p.G315C) alteration is located in exon 11 (coding exon 10) of the FAM227B gene. This alteration results from a G to T substitution at nucleotide position 943, causing the glycine (G) at amino acid position 315 to be replaced by a cysteine (C). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at