chr2-97085861-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001320848.2(FAHD2B):c.523G>A(p.Ala175Thr) variant causes a missense, splice region change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 15/23 in silico tools predict a benign outcome for this variant. 3/3 splice prediction tools predict no significant impact on normal splicing. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001320848.2 missense, splice_region
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
FAHD2B | NM_001320848.2 | c.523G>A | p.Ala175Thr | missense_variant, splice_region_variant | 6/9 | ENST00000414820.6 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
FAHD2B | ENST00000414820.6 | c.523G>A | p.Ala175Thr | missense_variant, splice_region_variant | 6/9 | 5 | NM_001320848.2 | P1 | |
FAHD2B | ENST00000272610.3 | c.523G>A | p.Ala175Thr | missense_variant, splice_region_variant | 5/8 | 1 | P1 | ||
FAHD2B | ENST00000463096.5 | n.728G>A | non_coding_transcript_exon_variant | 3/5 | 5 | ||||
FAHD2B | ENST00000474849.1 | n.121-1584G>A | intron_variant, non_coding_transcript_variant | 5 |
Frequencies
GnomAD3 genomes Cov.: 30
GnomAD4 exome Cov.: 31
GnomAD4 genome Cov.: 30
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Aug 09, 2021 | The c.523G>A (p.A175T) alteration is located in exon 5 (coding exon 4) of the FAHD2B gene. This alteration results from a G to A substitution at nucleotide position 523, causing the alanine (A) at amino acid position 175 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.