chr6-32828908-A-A

Variant summary

Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP6_Moderate

The variant was absent in control chromosomes in GnomAD project. Variant has been reported in ClinVar as Benign (★).

Frequency

Genomes: not found (cov: 31)

Consequence

Unknown

Scores

Not classified

Clinical Significance

Benign criteria provided, single submitter B:2

Conservation

PhyloP100: 1.58
Variant links:

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ACMG classification

Verdict is Uncertain_significance. Variant got 0 ACMG points.

PM2
Very rare variant in population databases, with high coverage;
BP6
Variant 6-32828908-A-A is Benign according to our data. Variant chr6-32828908-A-A is described in ClinVar as [Benign]. Clinvar id is 13726.Status of the report is criteria_provided_single_submitter, 1 stars.

Transcripts

RefSeq

Gene Transcript HGVSc HGVSp Effect #exon/exons MANE UniProt

Ensembl

Gene Transcript HGVSc HGVSp Effect #exon/exons TSL MANE Appris UniProt

Frequencies

GnomAD3 genomes
Cov.:
31
GnomAD4 exome
Cov.:
41
GnomAD4 genome
Cov.:
31

ClinVar

Significance: Benign
Submissions summary: Benign:2
Revision: criteria provided, single submitter
LINK: link

Submissions by phenotype

MHC class I deficiency Benign:1
Benign, criteria provided, single submitterclinical testingInvitaeFeb 01, 2024- -
PEPTIDE TRANSPORTER PSF2 POLYMORPHISM Benign:1
Benign, no assertion criteria providedliterature onlyOMIMMay 01, 1992- -

Computational scores

Source: dbNSFP v4.3

Name
Calibrated prediction
Score
Prediction

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

No publications associated with this variant yet.

Other links and lift over

hg19: chr6-32796685; API