rs12339582
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_001371189.2(UNC13B):c.11943G>T(p.Glu3981Asp) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00544 in 1,614,082 control chromosomes in the GnomAD database, including 343 homozygotes. In-silico tool predicts a benign outcome for this variant. 11/19 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001371189.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
UNC13B | NM_001371189.2 | c.11943G>T | p.Glu3981Asp | missense_variant | 33/40 | ENST00000635942.2 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
UNC13B | ENST00000635942.2 | c.11943G>T | p.Glu3981Asp | missense_variant | 33/40 | 5 | NM_001371189.2 |
Frequencies
GnomAD3 genomes ? AF: 0.0258 AC: 3927AN: 152146Hom.: 182 Cov.: 32
GnomAD3 exomes AF: 0.00779 AC: 1956AN: 251246Hom.: 70 AF XY: 0.00579 AC XY: 786AN XY: 135778
GnomAD4 exome AF: 0.00331 AC: 4836AN: 1461818Hom.: 161 Cov.: 32 AF XY: 0.00299 AC XY: 2175AN XY: 727208
GnomAD4 genome ? AF: 0.0259 AC: 3940AN: 152264Hom.: 182 Cov.: 32 AF XY: 0.0249 AC XY: 1856AN XY: 74452
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at