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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 13-101714476-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=101714476&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "13",
      "pos": 101714476,
      "ref": "G",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_004791.3",
      "consequences": [
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.1318G>C",
          "hgvs_p": "p.Glu440Gln",
          "transcript": "NM_004791.3",
          "protein_id": "NP_004782.1",
          "transcript_support_level": null,
          "aa_start": 440,
          "aa_end": null,
          "aa_length": 494,
          "cds_start": 1318,
          "cds_end": null,
          "cds_length": 1485,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000376180.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_004791.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.1318G>C",
          "hgvs_p": "p.Glu440Gln",
          "transcript": "ENST00000376180.8",
          "protein_id": "ENSP00000365351.3",
          "transcript_support_level": 1,
          "aa_start": 440,
          "aa_end": null,
          "aa_length": 494,
          "cds_start": 1318,
          "cds_end": null,
          "cds_length": 1485,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_004791.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000376180.8"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.1171G>C",
          "hgvs_p": "p.Glu391Gln",
          "transcript": "ENST00000618057.4",
          "protein_id": "ENSP00000481484.1",
          "transcript_support_level": 1,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 445,
          "cds_start": 1171,
          "cds_end": null,
          "cds_length": 1338,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000618057.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FGF14",
          "gene_hgnc_id": 3671,
          "hgvs_c": "c.*8355C>G",
          "hgvs_p": null,
          "transcript": "NM_004115.4",
          "protein_id": "NP_004106.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 247,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 744,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000376143.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_004115.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FGF14",
          "gene_hgnc_id": 3671,
          "hgvs_c": "c.*8355C>G",
          "hgvs_p": null,
          "transcript": "ENST00000376143.5",
          "protein_id": "ENSP00000365313.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 247,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 744,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_004115.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000376143.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FGF14",
          "gene_hgnc_id": 3671,
          "hgvs_c": "c.*8355C>G",
          "hgvs_p": null,
          "transcript": "ENST00000376131.9",
          "protein_id": "ENSP00000365301.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 252,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 759,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000376131.9"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.1318G>C",
          "hgvs_p": "p.Glu440Gln",
          "transcript": "ENST00000907748.1",
          "protein_id": "ENSP00000577807.1",
          "transcript_support_level": null,
          "aa_start": 440,
          "aa_end": null,
          "aa_length": 494,
          "cds_start": 1318,
          "cds_end": null,
          "cds_length": 1485,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000907748.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.1195G>C",
          "hgvs_p": "p.Glu399Gln",
          "transcript": "ENST00000946855.1",
          "protein_id": "ENSP00000616914.1",
          "transcript_support_level": null,
          "aa_start": 399,
          "aa_end": null,
          "aa_length": 453,
          "cds_start": 1195,
          "cds_end": null,
          "cds_length": 1362,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000946855.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.1171G>C",
          "hgvs_p": "p.Glu391Gln",
          "transcript": "NM_001271755.2",
          "protein_id": "NP_001258684.1",
          "transcript_support_level": null,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 445,
          "cds_start": 1171,
          "cds_end": null,
          "cds_length": 1338,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001271755.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.1039G>C",
          "hgvs_p": "p.Glu347Gln",
          "transcript": "NM_001271756.2",
          "protein_id": "NP_001258685.1",
          "transcript_support_level": null,
          "aa_start": 347,
          "aa_end": null,
          "aa_length": 401,
          "cds_start": 1039,
          "cds_end": null,
          "cds_length": 1206,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001271756.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.1039G>C",
          "hgvs_p": "p.Glu347Gln",
          "transcript": "ENST00000376162.7",
          "protein_id": "ENSP00000365332.3",
          "transcript_support_level": 2,
          "aa_start": 347,
          "aa_end": null,
          "aa_length": 401,
          "cds_start": 1039,
          "cds_end": null,
          "cds_length": 1206,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000376162.7"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.1036G>C",
          "hgvs_p": "p.Glu346Gln",
          "transcript": "ENST00000907749.1",
          "protein_id": "ENSP00000577808.1",
          "transcript_support_level": null,
          "aa_start": 346,
          "aa_end": null,
          "aa_length": 400,
          "cds_start": 1036,
          "cds_end": null,
          "cds_length": 1203,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000907749.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.895G>C",
          "hgvs_p": "p.Glu299Gln",
          "transcript": "NM_001271754.2",
          "protein_id": "NP_001258683.1",
          "transcript_support_level": null,
          "aa_start": 299,
          "aa_end": null,
          "aa_length": 353,
          "cds_start": 895,
          "cds_end": null,
          "cds_length": 1062,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001271754.2"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.895G>C",
          "hgvs_p": "p.Glu299Gln",
          "transcript": "ENST00000545560.6",
          "protein_id": "ENSP00000439903.1",
          "transcript_support_level": 2,
          "aa_start": 299,
          "aa_end": null,
          "aa_length": 353,
          "cds_start": 895,
          "cds_end": null,
          "cds_length": 1062,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000545560.6"
        },
        {
          "aa_ref": "E",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITGBL1",
          "gene_hgnc_id": 6164,
          "hgvs_c": "c.457G>C",
          "hgvs_p": "p.Glu153Gln",
          "transcript": "ENST00000490242.2",
          "protein_id": "ENSP00000475328.1",
          "transcript_support_level": 2,
          "aa_start": 153,
          "aa_end": null,
          "aa_length": 207,
          "cds_start": 457,
          "cds_end": null,
          "cds_length": 624,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000490242.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FGF14",
          "gene_hgnc_id": 3671,
          "hgvs_c": "c.*8355C>G",
          "hgvs_p": null,
          "transcript": "NM_175929.3",
          "protein_id": "NP_787125.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 252,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 759,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_175929.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FGF14",
          "gene_hgnc_id": 3671,
          "hgvs_c": "c.*8355C>G",
          "hgvs_p": null,
          "transcript": "NM_001321939.2",
          "protein_id": "NP_001308868.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 215,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 648,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001321939.2"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FGF14",
          "gene_hgnc_id": 3671,
          "hgvs_c": "c.*8355C>G",
          "hgvs_p": null,
          "transcript": "NM_001321945.2",
          "protein_id": "NP_001308874.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 213,
          "cds_start": null,
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          "cds_length": 642,
          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001321945.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FGF14",
          "gene_hgnc_id": 3671,
          "hgvs_c": "c.*8355C>G",
          "hgvs_p": null,
          "transcript": "NM_001321948.2",
          "protein_id": "NP_001308877.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 213,
          "cds_start": null,
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          "cds_length": 642,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001321948.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FGF14",
          "gene_hgnc_id": 3671,
          "hgvs_c": "c.*8355C>G",
          "hgvs_p": null,
          "transcript": "NM_001379342.1",
          "protein_id": "NP_001366271.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 213,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 642,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001379342.1"
        },
        {
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        {
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          "consequences": [
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          "exon_count": 7,
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          "gene_symbol": "FGF14",
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          "transcript": "NM_001321938.2",
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          "aa_start": null,
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          "cds_length": 564,
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          "biotype": "protein_coding",
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        {
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          "consequences": [
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          "gene_symbol": "FGF14",
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          "hgvs_c": "c.*8355C>G",
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          "transcript": "NM_001321941.2",
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        {
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          "consequences": [
            "3_prime_UTR_variant"
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          "gene_symbol": "FGF14",
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          "hgvs_c": "c.*8355C>G",
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          "transcript": "NM_001321946.2",
          "protein_id": "NP_001308875.1",
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          "aa_length": 163,
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          "cds_length": 492,
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          "biotype": "protein_coding",
          "feature": "NM_001321946.2"
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      ],
      "gene_symbol": "ITGBL1",
      "gene_hgnc_id": 6164,
      "dbsnp": "rs1053005621",
      "frequency_reference_population": 0.000002739062,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 4,
      "gnomad_exomes_af": 0.00000273906,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 4,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.4055860638618469,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.10000000149011612,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.513,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.1557,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.04,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 9.602,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.1,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 1,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4",
      "acmg_by_gene": [
        {
          "score": 1,
          "benign_score": 1,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_004791.3",
          "gene_symbol": "ITGBL1",
          "hgnc_id": 6164,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1318G>C",
          "hgvs_p": "p.Glu440Gln"
        },
        {
          "score": 1,
          "benign_score": 1,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_175929.3",
          "gene_symbol": "FGF14",
          "hgnc_id": 3671,
          "effects": [
            "3_prime_UTR_variant"
          ],
          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.*8355C>G",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.