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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 19-10829116-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=10829116&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "19",
      "pos": 10829116,
      "ref": "T",
      "alt": "C",
      "effect": "synonymous_variant",
      "transcript": "NM_001005360.3",
      "consequences": [
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2139T>C",
          "hgvs_p": "p.Ala713Ala",
          "transcript": "NM_001005361.3",
          "protein_id": "NP_001005361.1",
          "transcript_support_level": null,
          "aa_start": 713,
          "aa_end": null,
          "aa_length": 870,
          "cds_start": 2139,
          "cds_end": null,
          "cds_length": 2613,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000389253.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001005361.3"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2139T>C",
          "hgvs_p": "p.Ala713Ala",
          "transcript": "ENST00000389253.9",
          "protein_id": "ENSP00000373905.4",
          "transcript_support_level": 5,
          "aa_start": 713,
          "aa_end": null,
          "aa_length": 870,
          "cds_start": 2139,
          "cds_end": null,
          "cds_length": 2613,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001005361.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000389253.9"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2139T>C",
          "hgvs_p": "p.Ala713Ala",
          "transcript": "ENST00000355667.11",
          "protein_id": "ENSP00000347890.6",
          "transcript_support_level": 1,
          "aa_start": 713,
          "aa_end": null,
          "aa_length": 870,
          "cds_start": 2139,
          "cds_end": null,
          "cds_length": 2613,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000355667.11"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2139T>C",
          "hgvs_p": "p.Ala713Ala",
          "transcript": "ENST00000585892.5",
          "protein_id": "ENSP00000468734.1",
          "transcript_support_level": 1,
          "aa_start": 713,
          "aa_end": null,
          "aa_length": 869,
          "cds_start": 2139,
          "cds_end": null,
          "cds_length": 2610,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000585892.5"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2127T>C",
          "hgvs_p": "p.Ala709Ala",
          "transcript": "ENST00000359692.10",
          "protein_id": "ENSP00000352721.6",
          "transcript_support_level": 1,
          "aa_start": 709,
          "aa_end": null,
          "aa_length": 866,
          "cds_start": 2127,
          "cds_end": null,
          "cds_length": 2601,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000359692.10"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2232T>C",
          "hgvs_p": "p.Ala744Ala",
          "transcript": "ENST00000957427.1",
          "protein_id": "ENSP00000627486.1",
          "transcript_support_level": null,
          "aa_start": 744,
          "aa_end": null,
          "aa_length": 900,
          "cds_start": 2232,
          "cds_end": null,
          "cds_length": 2703,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957427.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2214T>C",
          "hgvs_p": "p.Ala738Ala",
          "transcript": "ENST00000916585.1",
          "protein_id": "ENSP00000586644.1",
          "transcript_support_level": null,
          "aa_start": 738,
          "aa_end": null,
          "aa_length": 895,
          "cds_start": 2214,
          "cds_end": null,
          "cds_length": 2688,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000916585.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2202T>C",
          "hgvs_p": "p.Ala734Ala",
          "transcript": "ENST00000957420.1",
          "protein_id": "ENSP00000627479.1",
          "transcript_support_level": null,
          "aa_start": 734,
          "aa_end": null,
          "aa_length": 891,
          "cds_start": 2202,
          "cds_end": null,
          "cds_length": 2676,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957420.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2169T>C",
          "hgvs_p": "p.Ala723Ala",
          "transcript": "ENST00000957428.1",
          "protein_id": "ENSP00000627487.1",
          "transcript_support_level": null,
          "aa_start": 723,
          "aa_end": null,
          "aa_length": 879,
          "cds_start": 2169,
          "cds_end": null,
          "cds_length": 2640,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957428.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2157T>C",
          "hgvs_p": "p.Ala719Ala",
          "transcript": "ENST00000908373.1",
          "protein_id": "ENSP00000578432.1",
          "transcript_support_level": null,
          "aa_start": 719,
          "aa_end": null,
          "aa_length": 876,
          "cds_start": 2157,
          "cds_end": null,
          "cds_length": 2631,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000908373.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2157T>C",
          "hgvs_p": "p.Ala719Ala",
          "transcript": "ENST00000908376.1",
          "protein_id": "ENSP00000578435.1",
          "transcript_support_level": null,
          "aa_start": 719,
          "aa_end": null,
          "aa_length": 875,
          "cds_start": 2157,
          "cds_end": null,
          "cds_length": 2628,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000908376.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2154T>C",
          "hgvs_p": "p.Ala718Ala",
          "transcript": "ENST00000957426.1",
          "protein_id": "ENSP00000627485.1",
          "transcript_support_level": null,
          "aa_start": 718,
          "aa_end": null,
          "aa_length": 875,
          "cds_start": 2154,
          "cds_end": null,
          "cds_length": 2628,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957426.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2148T>C",
          "hgvs_p": "p.Ala716Ala",
          "transcript": "ENST00000908381.1",
          "protein_id": "ENSP00000578440.1",
          "transcript_support_level": null,
          "aa_start": 716,
          "aa_end": null,
          "aa_length": 873,
          "cds_start": 2148,
          "cds_end": null,
          "cds_length": 2622,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000908381.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2151T>C",
          "hgvs_p": "p.Ala717Ala",
          "transcript": "ENST00000957430.1",
          "protein_id": "ENSP00000627489.1",
          "transcript_support_level": null,
          "aa_start": 717,
          "aa_end": null,
          "aa_length": 873,
          "cds_start": 2151,
          "cds_end": null,
          "cds_length": 2622,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957430.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2148T>C",
          "hgvs_p": "p.Ala716Ala",
          "transcript": "ENST00000957419.1",
          "protein_id": "ENSP00000627478.1",
          "transcript_support_level": null,
          "aa_start": 716,
          "aa_end": null,
          "aa_length": 872,
          "cds_start": 2148,
          "cds_end": null,
          "cds_length": 2619,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957419.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2139T>C",
          "hgvs_p": "p.Ala713Ala",
          "transcript": "NM_001005360.3",
          "protein_id": "NP_001005360.1",
          "transcript_support_level": null,
          "aa_start": 713,
          "aa_end": null,
          "aa_length": 870,
          "cds_start": 2139,
          "cds_end": null,
          "cds_length": 2613,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001005360.3"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2139T>C",
          "hgvs_p": "p.Ala713Ala",
          "transcript": "NM_001190716.2",
          "protein_id": "NP_001177645.1",
          "transcript_support_level": null,
          "aa_start": 713,
          "aa_end": null,
          "aa_length": 869,
          "cds_start": 2139,
          "cds_end": null,
          "cds_length": 2610,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001190716.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2139T>C",
          "hgvs_p": "p.Ala713Ala",
          "transcript": "ENST00000957413.1",
          "protein_id": "ENSP00000627472.1",
          "transcript_support_level": null,
          "aa_start": 713,
          "aa_end": null,
          "aa_length": 869,
          "cds_start": 2139,
          "cds_end": null,
          "cds_length": 2610,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957413.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2136T>C",
          "hgvs_p": "p.Ala712Ala",
          "transcript": "ENST00000957416.1",
          "protein_id": "ENSP00000627475.1",
          "transcript_support_level": null,
          "aa_start": 712,
          "aa_end": null,
          "aa_length": 869,
          "cds_start": 2136,
          "cds_end": null,
          "cds_length": 2610,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957416.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNM2",
          "gene_hgnc_id": 2974,
          "hgvs_c": "c.2136T>C",
          "hgvs_p": "p.Ala712Ala",
          "transcript": "ENST00000957417.1",
          "protein_id": "ENSP00000627476.1",
          "transcript_support_level": null,
          "aa_start": 712,
          "aa_end": null,
          "aa_length": 869,
          "cds_start": 2136,
          "cds_end": null,
          "cds_length": 2610,
          "cdna_start": null,
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      "computational_score_selected": -0.9100000262260437,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
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      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "alphamissense_score": null,
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      "bayesdelnoaf_score": -0.91,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -4.757,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
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      "acmg_score": -21,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BA1",
      "acmg_by_gene": [
        {
          "score": -21,
          "benign_score": 21,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BP7",
            "BA1"
          ],
          "verdict": "Benign",
          "transcript": "NM_001005360.3",
          "gene_symbol": "DNM2",
          "hgnc_id": 2974,
          "effects": [
            "synonymous_variant"
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          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.2139T>C",
          "hgvs_p": "p.Ala713Ala"
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        {
          "score": -20,
          "benign_score": 20,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BA1"
          ],
          "verdict": "Benign",
          "transcript": "NR_106851.1",
          "gene_symbol": "MIR6793",
          "hgnc_id": 50251,
          "effects": [
            "downstream_gene_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.*81T>C",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Autosomal dominant centronuclear myopathy,Charcot-Marie-Tooth disease dominant intermediate B,not provided,not specified",
      "clinvar_classification": "Benign/Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:2 B:7",
      "phenotype_combined": "not specified|Autosomal dominant centronuclear myopathy|Charcot-Marie-Tooth disease dominant intermediate B|not provided",
      "pathogenicity_classification_combined": "Benign/Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.