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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-105361300-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=105361300&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 105361300,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001450.4",
      "consequences": [
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "NM_001318895.3",
          "protein_id": "NP_001305824.1",
          "transcript_support_level": null,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 1108,
          "cdna_end": null,
          "cdna_length": 1582,
          "mane_select": "ENST00000530340.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001318895.3"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "ENST00000530340.6",
          "protein_id": "ENSP00000433567.2",
          "transcript_support_level": 1,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 1108,
          "cdna_end": null,
          "cdna_length": 1582,
          "mane_select": "NM_001318895.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000530340.6"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "ENST00000322142.13",
          "protein_id": "ENSP00000322909.8",
          "transcript_support_level": 1,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 990,
          "cdna_end": null,
          "cdna_length": 1478,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000322142.13"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "ENST00000344213.9",
          "protein_id": "ENSP00000344266.5",
          "transcript_support_level": 1,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 1402,
          "cdna_end": null,
          "cdna_length": 1876,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000344213.9"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "ENST00000393352.7",
          "protein_id": "ENSP00000377020.3",
          "transcript_support_level": 1,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 952,
          "cdna_end": null,
          "cdna_length": 1426,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000393352.7"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "ENST00000393353.7",
          "protein_id": "ENSP00000377021.3",
          "transcript_support_level": 1,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 1057,
          "cdna_end": null,
          "cdna_length": 1531,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000393353.7"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "ENST00000409177.6",
          "protein_id": "ENSP00000386892.3",
          "transcript_support_level": 1,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 1293,
          "cdna_end": null,
          "cdna_length": 4881,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000409177.6"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "ENST00000409807.5",
          "protein_id": "ENSP00000386665.1",
          "transcript_support_level": 1,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 1158,
          "cdna_end": null,
          "cdna_length": 1601,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000409807.5"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.979T>C",
          "hgvs_p": "p.Cys327Arg",
          "transcript": "ENST00000971465.1",
          "protein_id": "ENSP00000641524.1",
          "transcript_support_level": null,
          "aa_start": 327,
          "aa_end": null,
          "aa_length": 331,
          "cds_start": 979,
          "cds_end": null,
          "cds_length": 996,
          "cdna_start": 1166,
          "cdna_end": null,
          "cdna_length": 1636,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000971465.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.979T>C",
          "hgvs_p": "p.Cys327Arg",
          "transcript": "ENST00000971473.1",
          "protein_id": "ENSP00000641532.1",
          "transcript_support_level": null,
          "aa_start": 327,
          "aa_end": null,
          "aa_length": 331,
          "cds_start": 979,
          "cds_end": null,
          "cds_length": 996,
          "cdna_start": 1208,
          "cdna_end": null,
          "cdna_length": 1679,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000971473.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "NM_001039492.3",
          "protein_id": "NP_001034581.1",
          "transcript_support_level": null,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 980,
          "cdna_end": null,
          "cdna_length": 4568,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001039492.3"
        },
        {
          "aa_ref": "C",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "NM_001318894.1",
          "protein_id": "NP_001305823.1",
          "transcript_support_level": null,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 1293,
          "cdna_end": null,
          "cdna_length": 1767,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001318894.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "NM_001318896.2",
          "protein_id": "NP_001305825.1",
          "transcript_support_level": null,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 840,
          "cdna_start": 929,
          "cdna_end": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001318896.2"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "NM_001374399.1",
          "protein_id": "NP_001361328.1",
          "transcript_support_level": null,
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          "aa_length": 279,
          "cds_start": 823,
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          "mane_select": null,
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        },
        {
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          "exon_count": 6,
          "intron_rank": null,
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          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "NM_001450.4",
          "protein_id": "NP_001441.4",
          "transcript_support_level": null,
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          "cds_start": 823,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001450.4"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "NM_201555.3",
          "protein_id": "NP_963849.1",
          "transcript_support_level": null,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 279,
          "cds_start": 823,
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          "cdna_start": 1229,
          "cdna_end": null,
          "cdna_length": 1703,
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          "biotype": "protein_coding",
          "feature": "NM_201555.3"
        },
        {
          "aa_ref": "C",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "NM_201557.5",
          "protein_id": "NP_963851.2",
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        },
        {
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          ],
          "exon_rank": 6,
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          "exon_count": 6,
          "intron_rank": null,
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          "gene_symbol": "FHL2",
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          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "ENST00000408995.5",
          "protein_id": "ENSP00000386633.1",
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          "aa_start": 275,
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        {
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          ],
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          "exon_count": 7,
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          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "ENST00000876103.1",
          "protein_id": "ENSP00000546162.1",
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          "cds_start": 823,
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          "cdna_length": 1573,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000876103.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FHL2",
          "gene_hgnc_id": 3703,
          "hgvs_c": "c.823T>C",
          "hgvs_p": "p.Cys275Arg",
          "transcript": "ENST00000876104.1",
          "protein_id": "ENSP00000546163.1",
          "transcript_support_level": null,
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          "cdna_start": 2046,
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      "clinvar_classification": "",
      "clinvar_review_status": "",
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      "custom_annotations": null
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.