LINC02456

long intergenic non-protein coding RNA 2456, the group of Long intergenic non-protein coding RNAs

Basic information

Links

ENSG00000283052

∙ NCBI:105369942 ∙ ∙ HGNC:53389 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02456 gene.

Growth delay due to insulin-like growth factor type 1 deficiency (140 variants)
not provided (27 variants)
Inborn genetic diseases (3 variants)
Intellectual disability (1 variants)
not specified (1 variants)
IGF1-related condition (1 variants)
Microcephaly (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02456 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region ? Intron variants in splice region, excluding donor/acceptor (+/-2bp)						0
non coding ? UTR, intron and other, non coding variants		1 clinvar	115 clinvar	23 clinvar	24 clinvar	163
Total	0	1	115	23	24

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP