MIR3936HG

MIR3936 host gene, the group of MicroRNA non-coding host genes

Basic information

Region (hg38): 5:132311285-132370170

Links

ENSG00000233006 ∙ NCBI:553103 ∙ ∙ HGNC:40538 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MIR3936HG gene.

• Renal carnitine transport defect (15 variants)
• not provided (6 variants)
• Decreased circulating carnitine concentration (2 variants)
• SLC22A5-related disorder (2 variants)
• not specified (1 variants)
• Inborn genetic diseases (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MIR3936HG gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)			2			2
splice region						0
non coding	15	29	121	85	32	282
Total	15	29	123	85	32

Highest pathogenic variant AF is 0.00141

Variants in MIR3936HG

This is a list of pathogenic ClinVar variants found in the MIR3936HG region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
5-132312184-C-T			Likely benign (Oct 17, 2023)
5-132312198-T-C			Uncertain significance (Aug 04, 2023)
5-132312204-C-T			Uncertain significance (Sep 19, 2024)
5-132312208-C-A			Benign (Oct 26, 2024)
5-132312212-T-C			Uncertain significance (Apr 25, 2024)
5-132312218-G-A			Uncertain significance (Oct 14, 2023)
5-132312223-C-T		SLC22A4-related disorder	Likely benign (Jul 31, 2024)
5-132312232-C-T		not specified • SLC22A4-related disorder	Benign (Nov 19, 2024)
5-132312233-G-A			Uncertain significance (Oct 28, 2024)
5-132312237-C-T		not specified	Uncertain significance (Nov 21, 2024)
5-132312242-G-A			Uncertain significance (Oct 09, 2024)
5-132312263-A-G		not specified	Uncertain significance (Oct 05, 2021)
5-132312264-G-C			Uncertain significance (Nov 30, 2021)
5-132313493-A-G			Benign (May 14, 2021)
5-132313529-G-A			Benign (May 16, 2021)
5-132313594-T-C			Benign (Nov 11, 2024)
5-132313599-T-C			Likely benign (May 29, 2022)
5-132313607-T-C		SLC22A4-related disorder	Benign (Jan 20, 2025)
5-132313630-G-A			Uncertain significance (Oct 24, 2024)
5-132313639-G-A		not specified	Uncertain significance (Dec 19, 2022)
5-132313661-G-A			Uncertain significance (Oct 22, 2023)
5-132313674-G-C			Likely benign (Nov 03, 2022)
5-132313691-G-T			Uncertain significance (Nov 04, 2024)
5-132313700-T-C		not specified	Uncertain significance (Jul 14, 2021)
5-132313707-T-A			Likely benign (Aug 23, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP