1-161624591-A-C
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 0P and 2B. BP4_Moderate
The NM_001244753.2(FCGR3B):āc.626T>Gā(p.Val209Gly) variant causes a missense change. The variant allele was found at a frequency of 0.0000201 in 149,338 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 11/19 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_001244753.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
FCGR3B | ENST00000650385.1 | c.626T>G | p.Val209Gly | missense_variant | Exon 5 of 5 | NM_001244753.2 | ENSP00000497461.1 | |||
ENSG00000289768 | ENST00000699402.1 | c.40+6464T>G | intron_variant | Intron 1 of 3 | ENSP00000514363.1 |
Frequencies
GnomAD3 genomes AF: 0.0000201 AC: 3AN: 149338Hom.: 0 Cov.: 30
GnomAD3 exomes AF: 0.0000480 AC: 12AN: 250210Hom.: 0 AF XY: 0.0000296 AC XY: 4AN XY: 135242
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.00000824 AC: 12AN: 1456914Hom.: 0 Cov.: 32 AF XY: 0.00000690 AC XY: 5AN XY: 724804
GnomAD4 genome AF: 0.0000201 AC: 3AN: 149338Hom.: 0 Cov.: 30 AF XY: 0.0000275 AC XY: 2AN XY: 72848
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.626T>G (p.V209G) alteration is located in exon 6 (coding exon 5) of the FCGR3B gene. This alteration results from a T to G substitution at nucleotide position 626, causing the valine (V) at amino acid position 209 to be replaced by a glycine (G). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at