1-173873486-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001122770.3(ZBTB37):āc.943G>Cā(p.Val315Leu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000657 in 152,180 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_001122770.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
ZBTB37 | NM_001122770.3 | c.943G>C | p.Val315Leu | missense_variant | 4/5 | ENST00000367701.10 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ZBTB37 | ENST00000367701.10 | c.943G>C | p.Val315Leu | missense_variant | 4/5 | 1 | NM_001122770.3 | P1 | |
ZBTB37 | ENST00000695459.1 | c.943G>C | p.Val315Leu | missense_variant | 4/5 | P1 | |||
ZBTB37 | ENST00000367702.1 | c.943G>C | p.Val315Leu | missense_variant | 4/4 | 5 | |||
ZBTB37 | ENST00000367704.5 | c.923+2338G>C | intron_variant | 2 |
Frequencies
GnomAD3 genomes AF: 0.00000657 AC: 1AN: 152180Hom.: 0 Cov.: 31
GnomAD4 exome Cov.: 30
GnomAD4 genome AF: 0.00000657 AC: 1AN: 152180Hom.: 0 Cov.: 31 AF XY: 0.00 AC XY: 0AN XY: 74344
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Jun 24, 2022 | The c.943G>C (p.V315L) alteration is located in exon 4 (coding exon 2) of the ZBTB37 gene. This alteration results from a G to C substitution at nucleotide position 943, causing the valine (V) at amino acid position 315 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at