1-207506725-C-T
Variant summary
Our verdict is Benign. Variant got -10 ACMG points: 0P and 10B. BP4_StrongBP6_ModerateBS2
The NM_000651.6(CR1):c.313C>T(p.Arg105Cys) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00902 in 1,613,150 control chromosomes in the GnomAD database, including 95 homozygotes. In-silico tool predicts a benign outcome for this variant. 12/18 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★).
Frequency
Consequence
NM_000651.6 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -10 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00738 AC: 1123AN: 152140Hom.: 9 Cov.: 32
GnomAD3 exomes AF: 0.00738 AC: 1836AN: 248936Hom.: 11 AF XY: 0.00746 AC XY: 1008AN XY: 135058
GnomAD4 exome AF: 0.00919 AC: 13432AN: 1460892Hom.: 86 Cov.: 30 AF XY: 0.00890 AC XY: 6470AN XY: 726740
GnomAD4 genome AF: 0.00738 AC: 1123AN: 152258Hom.: 9 Cov.: 32 AF XY: 0.00743 AC XY: 553AN XY: 74452
ClinVar
Submissions by phenotype
not provided Benign:1
CR1: BP4, BS1, BS2 -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at