1-20849462-T-C
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_001391906.1(EIF4G3):āc.3841A>Gā(p.Lys1281Glu) variant causes a missense change. The variant allele was found at a frequency of 0.000369 in 1,564,564 control chromosomes in the GnomAD database, including 1 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_001391906.1 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
EIF4G3 | NM_001391906.1 | c.3841A>G | p.Lys1281Glu | missense_variant | Exon 29 of 37 | ENST00000602326.6 | NP_001378835.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
EIF4G3 | ENST00000602326.6 | c.3841A>G | p.Lys1281Glu | missense_variant | Exon 29 of 37 | 1 | NM_001391906.1 | ENSP00000473510.2 |
Frequencies
GnomAD3 genomes AF: 0.0000986 AC: 15AN: 152068Hom.: 0 Cov.: 31
GnomAD3 exomes AF: 0.0000989 AC: 21AN: 212286Hom.: 0 AF XY: 0.0000519 AC XY: 6AN XY: 115644
GnomAD4 exome AF: 0.000398 AC: 562AN: 1412496Hom.: 1 Cov.: 30 AF XY: 0.000393 AC XY: 276AN XY: 701788
GnomAD4 genome AF: 0.0000986 AC: 15AN: 152068Hom.: 0 Cov.: 31 AF XY: 0.0000808 AC XY: 6AN XY: 74286
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.3781A>G (p.K1261E) alteration is located in exon 27 (coding exon 23) of the EIF4G3 gene. This alteration results from a A to G substitution at nucleotide position 3781, causing the lysine (K) at amino acid position 1261 to be replaced by a glutamic acid (E). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at