1-26826989-T-A
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_032283.3(ZDHHC18):c.185T>A(p.Leu62His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000489 in 1,227,362 control chromosomes in the GnomAD database, including 1 homozygotes. In-silico tool predicts a benign outcome for this variant. 13/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_032283.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
ZDHHC18 | NM_032283.3 | c.185T>A | p.Leu62His | missense_variant | 1/8 | ENST00000374142.9 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ZDHHC18 | ENST00000374142.9 | c.185T>A | p.Leu62His | missense_variant | 1/8 | 1 | NM_032283.3 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.0000468 AC: 7AN: 149500Hom.: 0 Cov.: 31
GnomAD4 exome AF: 0.0000492 AC: 53AN: 1077756Hom.: 1 Cov.: 31 AF XY: 0.0000511 AC XY: 26AN XY: 508980
GnomAD4 genome ? AF: 0.0000468 AC: 7AN: 149606Hom.: 0 Cov.: 31 AF XY: 0.0000685 AC XY: 5AN XY: 73006
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | May 05, 2023 | The c.185T>A (p.L62H) alteration is located in exon 1 (coding exon 1) of the ZDHHC18 gene. This alteration results from a T to A substitution at nucleotide position 185, causing the leucine (L) at amino acid position 62 to be replaced by a histidine (H). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at