10-45374343-A-G
Variant summary
Our verdict is Likely benign. Variant got -6 ACMG points: 0P and 6B. BP4_ModerateBS2
The NM_000698.5(ALOX5):āc.64A>Gā(p.Ile22Val) variant causes a missense change. The variant allele was found at a frequency of 0.00019 in 1,538,490 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 12/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_000698.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -6 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000164 AC: 25AN: 151992Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.000130 AC: 19AN: 145632Hom.: 0 AF XY: 0.000151 AC XY: 12AN XY: 79386
GnomAD4 exome AF: 0.000193 AC: 268AN: 1386386Hom.: 0 Cov.: 32 AF XY: 0.000181 AC XY: 124AN XY: 685608
GnomAD4 genome AF: 0.000164 AC: 25AN: 152104Hom.: 0 Cov.: 33 AF XY: 0.000121 AC XY: 9AN XY: 74368
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.64A>G (p.I22V) alteration is located in exon 1 (coding exon 1) of the ALOX5 gene. This alteration results from a A to G substitution at nucleotide position 64, causing the isoleucine (I) at amino acid position 22 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at