10-45382673-A-C
Variant summary
Our verdict is Likely benign. Variant got -4 ACMG points: 0P and 4B. BS2
The NM_001320862.2(ALOX5):c.-95A>C variant causes a 5 prime UTR premature start codon gain change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.00000496 in 1,612,496 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001320862.2 5_prime_UTR_premature_start_codon_gain
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -4 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ALOX5 | ENST00000374391.7 | c.341A>C | p.Asp114Ala | missense_variant | Exon 2 of 14 | 1 | NM_000698.5 | ENSP00000363512.2 | ||
ALOX5 | ENST00000542434.5 | c.341A>C | p.Asp114Ala | missense_variant | Exon 2 of 13 | 1 | ENSP00000437634.1 |
Frequencies
GnomAD3 genomes AF: 0.0000131 AC: 2AN: 152216Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.0000323 AC: 8AN: 247404Hom.: 0 AF XY: 0.0000448 AC XY: 6AN XY: 133908
GnomAD4 exome AF: 0.00000411 AC: 6AN: 1460280Hom.: 0 Cov.: 33 AF XY: 0.00000275 AC XY: 2AN XY: 726326
GnomAD4 genome AF: 0.0000131 AC: 2AN: 152216Hom.: 0 Cov.: 33 AF XY: 0.0000134 AC XY: 1AN XY: 74362
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.341A>C (p.D114A) alteration is located in exon 2 (coding exon 2) of the ALOX5 gene. This alteration results from a A to C substitution at nucleotide position 341, causing the aspartic acid (D) at amino acid position 114 to be replaced by an alanine (A). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at