10-86962974-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_003087.3(SNCG):āc.373G>Cā(p.Gly125Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000337 in 1,603,566 control chromosomes in the GnomAD database, including 1 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/21 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_003087.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
SNCG | NM_003087.3 | c.373G>C | p.Gly125Arg | missense_variant | Exon 5 of 5 | ENST00000372017.4 | NP_003078.2 | |
SNCG | XM_047425681.1 | c.700G>C | p.Gly234Arg | missense_variant | Exon 7 of 7 | XP_047281637.1 | ||
SNCG | NM_001330120.2 | c.*44G>C | 3_prime_UTR_variant | Exon 7 of 7 | NP_001317049.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0000263 AC: 4AN: 152214Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.0000218 AC: 5AN: 229056Hom.: 0 AF XY: 0.0000243 AC XY: 3AN XY: 123446
GnomAD4 exome AF: 0.0000345 AC: 50AN: 1451352Hom.: 1 Cov.: 31 AF XY: 0.0000375 AC XY: 27AN XY: 720600
GnomAD4 genome AF: 0.0000263 AC: 4AN: 152214Hom.: 0 Cov.: 33 AF XY: 0.0000403 AC XY: 3AN XY: 74368
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at