11-126290942-G-T
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001318777.2(TIRAP):c.48G>T(p.Lys16Asn) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000688 in 1,454,104 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001318777.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TIRAP | NM_001318777.2 | c.48G>T | p.Lys16Asn | missense_variant | Exon 3 of 5 | ENST00000392679.6 | NP_001305706.1 | |
TIRAP | NM_001318776.2 | c.48G>T | p.Lys16Asn | missense_variant | Exon 3 of 4 | NP_001305705.1 | ||
TIRAP | NM_148910.3 | c.48G>T | p.Lys16Asn | missense_variant | Exon 4 of 5 | NP_683708.1 | ||
TIRAP | NM_001039661.2 | c.48G>T | p.Lys16Asn | missense_variant | Exon 4 of 6 | NP_001034750.1 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome AF: 6.88e-7 AC: 1AN: 1454104Hom.: 0 Cov.: 31 AF XY: 0.00000138 AC XY: 1AN XY: 722584
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.48G>T (p.K16N) alteration is located in exon 4 (coding exon 1) of the TIRAP gene. This alteration results from a G to T substitution at nucleotide position 48, causing the lysine (K) at amino acid position 16 to be replaced by an asparagine (N). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at