12-109397747-A-G
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_001101421.4(MYO1H):āc.505A>Gā(p.Arg169Gly) variant causes a missense change. The variant allele was found at a frequency of 0.0000123 in 1,459,956 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_001101421.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
MYO1H | NM_001101421.4 | c.505A>G | p.Arg169Gly | missense_variant | Exon 5 of 32 | ENST00000310903.10 | NP_001094891.4 | |
MYO1H | XM_011538223.3 | c.457A>G | p.Arg153Gly | missense_variant | Exon 6 of 34 | XP_011536525.1 | ||
MYO1H | XM_047428738.1 | c.457A>G | p.Arg153Gly | missense_variant | Exon 4 of 31 | XP_047284694.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
MYO1H | ENST00000310903.10 | c.505A>G | p.Arg169Gly | missense_variant | Exon 5 of 32 | 5 | NM_001101421.4 | ENSP00000439182.2 |
Frequencies
GnomAD3 genomes Cov.: 31
GnomAD3 exomes AF: 0.0000364 AC: 9AN: 247362Hom.: 0 AF XY: 0.0000224 AC XY: 3AN XY: 134216
GnomAD4 exome AF: 0.0000123 AC: 18AN: 1459956Hom.: 0 Cov.: 29 AF XY: 0.0000110 AC XY: 8AN XY: 726280
GnomAD4 genome Cov.: 31
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.457A>G (p.R153G) alteration is located in exon 4 (coding exon 4) of the MYO1H gene. This alteration results from a A to G substitution at nucleotide position 457, causing the arginine (R) at amino acid position 153 to be replaced by a glycine (G). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at