12-15681305-GTAATAATAATAATAA-GTAATAATAATAATAATAATAATAATAATAATAA
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BS1_Supporting
The NM_004447.6(EPS8):c.60-21_60-4dupTTATTATTATTATTATTA variant causes a splice region, intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000323 in 1,083,824 control chromosomes in the GnomAD database, including 1 homozygotes. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_004447.6 splice_region, intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000225 AC: 33AN: 146964Hom.: 1 Cov.: 27
GnomAD4 exome AF: 0.00000213 AC: 2AN: 936860Hom.: 0 Cov.: 11 AF XY: 0.00000212 AC XY: 1AN XY: 471864
GnomAD4 genome AF: 0.000225 AC: 33AN: 146964Hom.: 1 Cov.: 27 AF XY: 0.000210 AC XY: 15AN XY: 71454
ClinVar
Submissions by phenotype
not provided Uncertain:1
This sequence change falls in intron 2 of the EPS8 gene. It does not directly change the encoded amino acid sequence of the EPS8 protein. This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with EPS8-related conditions. Experimental studies and prediction algorithms are not available or were not evaluated, and the effect of this variant on mRNA splicing is currently unknown. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at