13-48349023-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 3P and 0B. PM2PP3
The NM_000321.3(RB1):c.607G>C(p.Gly203Arg) variant causes a missense, splice region change. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a pathogenic outcome for this variant. 2/3 splice prediction tools predicting alterations to normal splicing. Variant has been reported in ClinVar as Uncertain significance (★). Another nucleotide change resulting in same amino acid change has been previously reported as Uncertain significancein ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. G203E) has been classified as Uncertain significance.
Frequency
Consequence
NM_000321.3 missense, splice_region
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
RB1 | NM_000321.3 | c.607G>C | p.Gly203Arg | missense_variant, splice_region_variant | 6/27 | ENST00000267163.6 | |
RB1 | NM_001407165.1 | c.607G>C | p.Gly203Arg | missense_variant, splice_region_variant | 6/27 | ||
RB1 | NM_001407166.1 | c.607G>C | p.Gly203Arg | missense_variant, splice_region_variant | 6/17 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
RB1 | ENST00000267163.6 | c.607G>C | p.Gly203Arg | missense_variant, splice_region_variant | 6/27 | 1 | NM_000321.3 | P1 | |
RB1 | ENST00000467505.5 | c.138-10994G>C | intron_variant, NMD_transcript_variant | 1 | |||||
RB1 | ENST00000650461.1 | c.607G>C | p.Gly203Arg | missense_variant, splice_region_variant | 6/27 | ||||
RB1 | ENST00000525036.1 | n.769G>C | splice_region_variant, non_coding_transcript_exon_variant | 6/7 | 3 |
Frequencies
GnomAD3 genomes ? Cov.: 32
GnomAD4 exome Cov.: 30
GnomAD4 genome ? Cov.: 32
ClinVar
Submissions by phenotype
Retinoblastoma Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Mendelics | Jul 02, 2018 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at