14-23389062-AGGG-AG
Variant summary
Our verdict is Benign. Variant got -16 ACMG points: 0P and 16B. BP6_Very_StrongBA1
The NM_002471.4(MYH6):c.3979-9_3979-8delCC variant causes a splice region, intron change involving the alteration of a non-conserved nucleotide. 1/1 splice prediction tools predict no significant impact on normal splicing. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_002471.4 splice_region, intron
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -16 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
MYH6 | NM_002471.4 | c.3979-9_3979-8delCC | splice_region_variant, intron_variant | Intron 28 of 38 | ENST00000405093.9 | NP_002462.2 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.129 AC: 14951AN: 115620Hom.: 761 Cov.: 0
GnomAD3 exomes AF: 0.122 AC: 17018AN: 139674Hom.: 903 AF XY: 0.120 AC XY: 9184AN XY: 76278
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.141 AC: 149380AN: 1057912Hom.: 11301 AF XY: 0.137 AC XY: 72412AN XY: 527248
GnomAD4 genome AF: 0.129 AC: 14958AN: 115736Hom.: 763 Cov.: 0 AF XY: 0.125 AC XY: 7118AN XY: 56878
ClinVar
Submissions by phenotype
not specified Benign:5
- -
This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease. -
- -
- -
- -
Hypertrophic cardiomyopathy 14 Benign:1
- -
Cardiomyopathy Benign:1
- -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at