14-24507495-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_001836.5(CMA1):c.70G>A(p.Gly24Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000632 in 1,613,342 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001836.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
CMA1 | ENST00000250378.7 | c.70G>A | p.Gly24Arg | missense_variant | Exon 2 of 5 | 1 | NM_001836.5 | ENSP00000250378.3 | ||
CMA1 | ENST00000206446.4 | c.-125+683G>A | intron_variant | Intron 1 of 3 | 1 | ENSP00000206446.4 | ||||
ENSG00000258744 | ENST00000555109.1 | n.144-639C>T | intron_variant | Intron 1 of 1 | 5 |
Frequencies
GnomAD3 genomes AF: 0.000171 AC: 26AN: 152148Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000719 AC: 18AN: 250198Hom.: 0 AF XY: 0.0000962 AC XY: 13AN XY: 135180
GnomAD4 exome AF: 0.0000520 AC: 76AN: 1461194Hom.: 0 Cov.: 31 AF XY: 0.0000550 AC XY: 40AN XY: 726854
GnomAD4 genome AF: 0.000171 AC: 26AN: 152148Hom.: 0 Cov.: 32 AF XY: 0.000121 AC XY: 9AN XY: 74324
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.70G>A (p.G24R) alteration is located in exon 2 (coding exon 2) of the CMA1 gene. This alteration results from a G to A substitution at nucleotide position 70, causing the glycine (G) at amino acid position 24 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at