14-58351139-G-A
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_002892.4(ARID4A):c.1471G>A(p.Asp491Asn) variant causes a missense change. The variant allele was found at a frequency of 0.00000249 in 1,606,406 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 12/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_002892.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ARID4A | NM_002892.4 | c.1471G>A | p.Asp491Asn | missense_variant | Exon 16 of 24 | ENST00000355431.8 | NP_002883.3 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0000197 AC: 3AN: 151934Hom.: 0 Cov.: 32
GnomAD4 exome AF: 6.88e-7 AC: 1AN: 1454472Hom.: 0 Cov.: 30 AF XY: 0.00000138 AC XY: 1AN XY: 723128
GnomAD4 genome AF: 0.0000197 AC: 3AN: 151934Hom.: 0 Cov.: 32 AF XY: 0.0000270 AC XY: 2AN XY: 74204
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.1471G>A (p.D491N) alteration is located in exon 16 (coding exon 15) of the ARID4A gene. This alteration results from a G to A substitution at nucleotide position 1471, causing the aspartic acid (D) at amino acid position 491 to be replaced by an asparagine (N). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at