14-68789706-T-G
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_004926.4(ZFP36L1):āc.844A>Cā(p.Met282Leu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000657 in 152,116 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 14/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_004926.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ZFP36L1 | NM_004926.4 | c.844A>C | p.Met282Leu | missense_variant | Exon 2 of 2 | ENST00000439696.3 | NP_004917.2 | |
ZFP36L1 | NM_001244701.1 | c.1051A>C | p.Met351Leu | missense_variant | Exon 3 of 3 | NP_001231630.1 | ||
ZFP36L1 | NM_001244698.2 | c.844A>C | p.Met282Leu | missense_variant | Exon 2 of 3 | NP_001231627.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ZFP36L1 | ENST00000439696.3 | c.844A>C | p.Met282Leu | missense_variant | Exon 2 of 2 | 1 | NM_004926.4 | ENSP00000388402.2 | ||
ZFP36L1 | ENST00000336440.4 | c.844A>C | p.Met282Leu | missense_variant | Exon 2 of 3 | 2 | ENSP00000337386.3 | |||
ZFP36L1 | ENST00000555997.1 | n.1048A>C | non_coding_transcript_exon_variant | Exon 2 of 2 | 3 |
Frequencies
GnomAD3 genomes AF: 0.00000658 AC: 1AN: 151996Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.00000399 AC: 1AN: 250318Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 135712
GnomAD4 exome Cov.: 32
GnomAD4 genome AF: 0.00000657 AC: 1AN: 152116Hom.: 0 Cov.: 32 AF XY: 0.00 AC XY: 0AN XY: 74364
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.844A>C (p.M282L) alteration is located in exon 2 (coding exon 2) of the ZFP36L1 gene. This alteration results from a A to C substitution at nucleotide position 844, causing the methionine (M) at amino acid position 282 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at