14-68789856-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_004926.4(ZFP36L1):c.694C>G(p.Leu232Val) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 14/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_004926.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ZFP36L1 | NM_004926.4 | c.694C>G | p.Leu232Val | missense_variant | Exon 2 of 2 | ENST00000439696.3 | NP_004917.2 | |
ZFP36L1 | NM_001244701.1 | c.901C>G | p.Leu301Val | missense_variant | Exon 3 of 3 | NP_001231630.1 | ||
ZFP36L1 | NM_001244698.2 | c.694C>G | p.Leu232Val | missense_variant | Exon 2 of 3 | NP_001231627.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ZFP36L1 | ENST00000439696.3 | c.694C>G | p.Leu232Val | missense_variant | Exon 2 of 2 | 1 | NM_004926.4 | ENSP00000388402.2 | ||
ZFP36L1 | ENST00000336440.4 | c.694C>G | p.Leu232Val | missense_variant | Exon 2 of 3 | 2 | ENSP00000337386.3 | |||
ZFP36L1 | ENST00000555997.1 | n.898C>G | non_coding_transcript_exon_variant | Exon 2 of 2 | 3 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome Cov.: 31
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.694C>G (p.L232V) alteration is located in exon 2 (coding exon 2) of the ZFP36L1 gene. This alteration results from a C to G substitution at nucleotide position 694, causing the leucine (L) at amino acid position 232 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.