15-20534295-C-A
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 0P and 2B. BP4_Moderate
The NM_001145004.2(GOLGA6L6):c.2139G>T(p.Arg713Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. In-silico tool predicts a benign outcome for this variant. 11/16 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001145004.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00 AC: 4AN: 118762Hom.: 0 Cov.: 15 FAILED QC
GnomAD3 exomes AF: 0.0000957 AC: 11AN: 114946Hom.: 0 AF XY: 0.000114 AC XY: 7AN XY: 61360
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.0000374 AC: 36AN: 962508Hom.: 0 Cov.: 16 AF XY: 0.0000286 AC XY: 14AN XY: 488744
GnomAD4 genome Data not reliable, filtered out with message: AS_VQSR AF: 0.0000337 AC: 4AN: 118852Hom.: 0 Cov.: 15 AF XY: 0.0000348 AC XY: 2AN XY: 57520
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.2217G>T (p.R739S) alteration is located in exon 8 (coding exon 8) of the GOLGA6L6 gene. This alteration results from a G to T substitution at nucleotide position 2217, causing the arginine (R) at amino acid position 739 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at