16-28606814-C-G
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_001055.4(SULT1A1):c.541G>C(p.Glu181Gln) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000959 in 1,460,512 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 14/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001055.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
SULT1A1 | NM_001055.4 | c.541G>C | p.Glu181Gln | missense_variant | 6/8 | ENST00000314752.12 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
SULT1A1 | ENST00000314752.12 | c.541G>C | p.Glu181Gln | missense_variant | 6/8 | 1 | NM_001055.4 | P1 | |
SULT1A1 | ENST00000569554.5 | c.541G>C | p.Glu181Gln | missense_variant | 5/7 | 1 | P1 | ||
SULT1A1 | ENST00000566189.5 | c.541G>C | p.Glu181Gln | missense_variant | 6/8 | 5 | |||
SULT1A1 | ENST00000567512.1 | c.415G>C | p.Glu139Gln | missense_variant | 5/6 | 3 |
Frequencies
GnomAD3 genomes ? Cov.: 36
GnomAD3 exomes AF: 0.00000398 AC: 1AN: 251232Hom.: 0 AF XY: 0.00000737 AC XY: 1AN XY: 135770
GnomAD4 exome AF: 0.00000959 AC: 14AN: 1460512Hom.: 0 Cov.: 89 AF XY: 0.00000826 AC XY: 6AN XY: 726590
GnomAD4 genome ? Cov.: 36
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Oct 03, 2022 | The c.541G>C (p.E181Q) alteration is located in exon 6 (coding exon 5) of the SULT1A1 gene. This alteration results from a G to C substitution at nucleotide position 541, causing the glutamic acid (E) at amino acid position 181 to be replaced by a glutamine (Q). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at