17-3572235-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_080704.4(TRPV1):āc.2118C>Gā(p.Ile706Met) variant causes a missense change. The variant allele was found at a frequency of 0.00000206 in 1,457,114 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_080704.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TRPV1 | NM_080704.4 | c.2118C>G | p.Ile706Met | missense_variant | Exon 15 of 17 | ENST00000572705.2 | NP_542435.2 | |
TRPV1 | NM_018727.5 | c.2118C>G | p.Ile706Met | missense_variant | Exon 14 of 16 | NP_061197.4 | ||
TRPV1 | NM_080705.4 | c.2118C>G | p.Ile706Met | missense_variant | Exon 14 of 16 | NP_542436.2 | ||
TRPV1 | NM_080706.3 | c.2118C>G | p.Ile706Met | missense_variant | Exon 13 of 15 | NP_542437.2 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD3 exomes AF: 0.00000416 AC: 1AN: 240532Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 130386
GnomAD4 exome AF: 0.00000206 AC: 3AN: 1457114Hom.: 0 Cov.: 66 AF XY: 0.00000138 AC XY: 1AN XY: 724358
GnomAD4 genome Cov.: 33
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.2118C>G (p.I706M) alteration is located in exon 13 (coding exon 13) of the TRPV1 gene. This alteration results from a C to G substitution at nucleotide position 2118, causing the isoleucine (I) at amino acid position 706 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at