17-82037482-T-G
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_016286.4(DCXR):āc.118A>Cā(p.Thr40Pro) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000434 in 1,383,572 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_016286.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
DCXR | NM_016286.4 | c.118A>C | p.Thr40Pro | missense_variant | Exon 2 of 8 | ENST00000306869.7 | NP_057370.1 | |
DCXR | NM_001195218.1 | c.112A>C | p.Thr38Pro | missense_variant | Exon 2 of 8 | NP_001182147.1 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 34
GnomAD3 exomes AF: 0.0000150 AC: 2AN: 133530Hom.: 0 AF XY: 0.0000136 AC XY: 1AN XY: 73662
GnomAD4 exome AF: 0.00000434 AC: 6AN: 1383572Hom.: 0 Cov.: 32 AF XY: 0.00000439 AC XY: 3AN XY: 683510
GnomAD4 genome Cov.: 34
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.118A>C (p.T40P) alteration is located in exon 2 (coding exon 2) of the DCXR gene. This alteration results from a A to C substitution at nucleotide position 118, causing the threonine (T) at amino acid position 40 to be replaced by a proline (P). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at