18-26227063-G-C
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_005640.3(TAF4B):āc.130G>Cā(p.Ala44Pro) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00346 in 1,595,256 control chromosomes in the GnomAD database, including 164 homozygotes. In-silico tool predicts a benign outcome for this variant. 13/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (ā ā ).
Frequency
Consequence
NM_005640.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
TAF4B | ENST00000269142.10 | c.130G>C | p.Ala44Pro | missense_variant | Exon 1 of 15 | 1 | NM_005640.3 | ENSP00000269142.6 | ||
TAF4B | ENST00000578121.5 | c.130G>C | p.Ala44Pro | missense_variant | Exon 1 of 15 | 2 | ENSP00000462980.1 | |||
TAF4B | ENST00000418698.3 | n.130G>C | non_coding_transcript_exon_variant | Exon 1 of 16 | 5 | ENSP00000389365.3 |
Frequencies
GnomAD3 genomes AF: 0.0178 AC: 2708AN: 152094Hom.: 66 Cov.: 32
GnomAD3 exomes AF: 0.00433 AC: 931AN: 215246Hom.: 34 AF XY: 0.00310 AC XY: 371AN XY: 119626
GnomAD4 exome AF: 0.00194 AC: 2796AN: 1443046Hom.: 97 Cov.: 31 AF XY: 0.00167 AC XY: 1196AN XY: 718122
GnomAD4 genome AF: 0.0178 AC: 2716AN: 152210Hom.: 67 Cov.: 32 AF XY: 0.0172 AC XY: 1282AN XY: 74418
ClinVar
Submissions by phenotype
not provided Benign:2
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at