18-45727281-C-T
Variant summary
Our verdict is Benign. Variant got -13 ACMG points: 0P and 13B. BP4_StrongBP6BA1
The NM_001128588.4(SLC14A1):c.10C>T(p.Arg4Trp) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.476 in 1,550,698 control chromosomes in the GnomAD database, including 178,705 homozygotes. In-silico tool predicts a benign outcome for this variant. 11/17 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (no stars).
Frequency
Consequence
NM_001128588.4 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -13 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.416 AC: 63251AN: 151970Hom.: 14179 Cov.: 33
GnomAD3 exomes AF: 0.474 AC: 73007AN: 153972Hom.: 17689 AF XY: 0.472 AC XY: 38523AN XY: 81700
GnomAD4 exome AF: 0.482 AC: 674572AN: 1398610Hom.: 164528 Cov.: 42 AF XY: 0.481 AC XY: 331592AN XY: 689858
GnomAD4 genome AF: 0.416 AC: 63259AN: 152088Hom.: 14177 Cov.: 33 AF XY: 0.415 AC XY: 30842AN XY: 74346
ClinVar
Submissions by phenotype
SLC14A1-related disorder Benign:1
This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at