19-53140768-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_032584.3(ZNF347):c.2060G>A(p.Gly687Asp) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000186 in 1,612,262 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 12/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_032584.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ZNF347 | NM_032584.3 | c.2060G>A | p.Gly687Asp | missense_variant | Exon 5 of 5 | ENST00000334197.12 | NP_115973.2 | |
ZNF347 | NM_001172674.2 | c.2063G>A | p.Gly688Asp | missense_variant | Exon 5 of 5 | NP_001166145.1 | ||
ZNF347 | NM_001172675.2 | c.2063G>A | p.Gly688Asp | missense_variant | Exon 5 of 5 | NP_001166146.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ZNF347 | ENST00000334197.12 | c.2060G>A | p.Gly687Asp | missense_variant | Exon 5 of 5 | 1 | NM_032584.3 | ENSP00000334146.6 | ||
ZNF347 | ENST00000452676.6 | c.2063G>A | p.Gly688Asp | missense_variant | Exon 5 of 5 | 2 | ENSP00000405218.2 | |||
ZNF347 | ENST00000601469.2 | c.2063G>A | p.Gly688Asp | missense_variant | Exon 5 of 5 | 2 | ENSP00000471712.2 | |||
ZNF347 | ENST00000601804.5 | c.97+7913G>A | intron_variant | Intron 3 of 3 | 4 | ENSP00000470590.1 |
Frequencies
GnomAD3 genomes AF: 0.00000658 AC: 1AN: 152076Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.00000401 AC: 1AN: 249442Hom.: 0 AF XY: 0.00000742 AC XY: 1AN XY: 134808
GnomAD4 exome AF: 0.00000137 AC: 2AN: 1460186Hom.: 0 Cov.: 30 AF XY: 0.00000138 AC XY: 1AN XY: 726320
GnomAD4 genome AF: 0.00000658 AC: 1AN: 152076Hom.: 0 Cov.: 33 AF XY: 0.0000135 AC XY: 1AN XY: 74292
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.2063G>A (p.G688D) alteration is located in exon 5 (coding exon 4) of the ZNF347 gene. This alteration results from a G to A substitution at nucleotide position 2063, causing the glycine (G) at amino acid position 688 to be replaced by an aspartic acid (D). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at