19-918407-GGGGA-G
Variant summary
Our verdict is Benign. Variant got -10 ACMG points: 0P and 10B. BP6_ModerateBA1
The NM_032551.5(KISS1R):c.245-133_245-130delAGGG variant causes a intron change. The variant allele was found at a frequency of 0.54 in 936,200 control chromosomes in the GnomAD database, including 114,550 homozygotes. Variant has been reported in ClinVar as Benign (★).
Frequency
Consequence
NM_032551.5 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -10 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
KISS1R | ENST00000234371.10 | c.245-136_245-133delGGGA | intron_variant | Intron 1 of 4 | 1 | NM_032551.5 | ENSP00000234371.3 | |||
KISS1R | ENST00000606939.2 | c.245-136_245-133delGGGA | intron_variant | Intron 1 of 3 | 5 | ENSP00000475639.1 | ||||
KISS1R | ENST00000592648.1 | c.244+662_244+665delGGGA | intron_variant | Intron 1 of 1 | 5 | ENSP00000467666.1 |
Frequencies
GnomAD3 genomes AF: 0.645 AC: 95285AN: 147826Hom.: 31176 Cov.: 0
GnomAD4 exome AF: 0.520 AC: 409830AN: 788260Hom.: 83348 AF XY: 0.516 AC XY: 203942AN XY: 395592
GnomAD4 genome AF: 0.645 AC: 95365AN: 147940Hom.: 31202 Cov.: 0 AF XY: 0.639 AC XY: 46054AN XY: 72076
ClinVar
Submissions by phenotype
not provided Benign:1
This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at