2-218265844-G-A
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_001087.5(AAMP):c.866C>T(p.Ala289Val) variant causes a missense change. The variant allele was found at a frequency of 0.0000707 in 1,612,802 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001087.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000125 AC: 19AN: 152228Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000172 AC: 43AN: 250316Hom.: 0 AF XY: 0.000118 AC XY: 16AN XY: 135442
GnomAD4 exome AF: 0.0000650 AC: 95AN: 1460574Hom.: 0 Cov.: 32 AF XY: 0.0000647 AC XY: 47AN XY: 726506
GnomAD4 genome AF: 0.000125 AC: 19AN: 152228Hom.: 0 Cov.: 32 AF XY: 0.000161 AC XY: 12AN XY: 74374
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.866C>T (p.A289V) alteration is located in exon 7 (coding exon 7) of the AAMP gene. This alteration results from a C to T substitution at nucleotide position 866, causing the alanine (A) at amino acid position 289 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at