2-27497334-C-G
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_001486.4(GCKR):āc.151C>Gā(p.Arg51Gly) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000684 in 1,461,862 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 11/19 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001486.4 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
GCKR | NM_001486.4 | c.151C>G | p.Arg51Gly | missense_variant | Exon 2 of 19 | ENST00000264717.7 | NP_001477.2 | |
GCKR | XM_011532763.1 | c.151C>G | p.Arg51Gly | missense_variant | Exon 2 of 13 | XP_011531065.1 | ||
GCKR | XR_001738699.1 | n.217C>G | non_coding_transcript_exon_variant | Exon 2 of 13 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
GCKR | ENST00000264717.7 | c.151C>G | p.Arg51Gly | missense_variant | Exon 2 of 19 | 1 | NM_001486.4 | ENSP00000264717.2 | ||
GCKR | ENST00000472290.1 | n.173C>G | non_coding_transcript_exon_variant | Exon 2 of 11 | 1 | |||||
GCKR | ENST00000453813.1 | c.67C>G | p.Arg23Gly | missense_variant | Exon 1 of 8 | 3 | ENSP00000399463.1 | |||
GCKR | ENST00000417872.5 | n.208C>G | non_coding_transcript_exon_variant | Exon 2 of 7 | 4 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD3 exomes AF: 0.00000398 AC: 1AN: 251488Hom.: 0 AF XY: 0.00000736 AC XY: 1AN XY: 135918
GnomAD4 exome AF: 6.84e-7 AC: 1AN: 1461862Hom.: 0 Cov.: 32 AF XY: 0.00000138 AC XY: 1AN XY: 727238
GnomAD4 genome Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at