2-70301972-C-T
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_001329752.2(FAM136A):c.40G>A(p.Glu14Lys) variant causes a missense change. The variant allele was found at a frequency of 0.0000292 in 1,607,942 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001329752.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0000920 AC: 14AN: 152214Hom.: 0 Cov.: 34
GnomAD3 exomes AF: 0.0000762 AC: 18AN: 236136Hom.: 0 AF XY: 0.0000467 AC XY: 6AN XY: 128530
GnomAD4 exome AF: 0.0000227 AC: 33AN: 1455612Hom.: 0 Cov.: 65 AF XY: 0.0000235 AC XY: 17AN XY: 723826
GnomAD4 genome AF: 0.0000919 AC: 14AN: 152330Hom.: 0 Cov.: 34 AF XY: 0.0000269 AC XY: 2AN XY: 74484
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.40G>A (p.E14K) alteration is located in exon 1 (coding exon 1) of the FAM136A gene. This alteration results from a G to A substitution at nucleotide position 40, causing the glutamic acid (E) at amino acid position 14 to be replaced by a lysine (K). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at