2-97113752-A-G
Variant summary
Our verdict is Benign. Variant got -10 ACMG points: 0P and 10B. BP4_StrongBP6_ModerateBS2
The NM_001354587.1(ANKRD36):āc.13A>Gā(p.Lys5Glu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00131 in 1,588,970 control chromosomes in the GnomAD database, including 34 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/19 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (ā ).
Frequency
Consequence
NM_001354587.1 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -10 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ANKRD36 | NM_001354587.1 | c.13A>G | p.Lys5Glu | missense_variant | Exon 1 of 76 | ENST00000420699.9 | NP_001341516.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ANKRD36 | ENST00000420699.9 | c.13A>G | p.Lys5Glu | missense_variant | Exon 1 of 76 | 5 | NM_001354587.1 | ENSP00000391950.4 | ||
ANKRD36 | ENST00000452478.2 | n.201A>G | non_coding_transcript_exon_variant | Exon 1 of 3 | 1 | |||||
ANKRD36 | ENST00000461153.7 | c.13A>G | p.Lys5Glu | missense_variant | Exon 1 of 75 | 5 | ENSP00000419530.3 | |||
ANKRD36 | ENST00000652721.1 | c.13A>G | p.Lys5Glu | missense_variant | Exon 1 of 76 | ENSP00000498611.1 |
Frequencies
GnomAD3 genomes AF: 0.00251 AC: 333AN: 132414Hom.: 5 Cov.: 31
GnomAD3 exomes AF: 0.00101 AC: 216AN: 213990Hom.: 4 AF XY: 0.00102 AC XY: 119AN XY: 116420
GnomAD4 exome AF: 0.00120 AC: 1755AN: 1456456Hom.: 29 Cov.: 32 AF XY: 0.00126 AC XY: 912AN XY: 724492
GnomAD4 genome AF: 0.00251 AC: 332AN: 132514Hom.: 5 Cov.: 31 AF XY: 0.00237 AC XY: 152AN XY: 64054
ClinVar
Submissions by phenotype
not provided Benign:1
ANKRD36: BS2 -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at