20-3072358-T-C
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_000915.4(OXT):c.323-5T>C variant causes a splice region, intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0027 in 1,609,176 control chromosomes in the GnomAD database, including 113 homozygotes. In-silico tool predicts a benign outcome for this variant. 3/3 splice prediction tools predict no significant impact on normal splicing. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_000915.4 splice_region, intron
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0152 AC: 2308AN: 151964Hom.: 71 Cov.: 33
GnomAD3 exomes AF: 0.00360 AC: 876AN: 243514Hom.: 25 AF XY: 0.00247 AC XY: 329AN XY: 133220
GnomAD4 exome AF: 0.00140 AC: 2040AN: 1457096Hom.: 42 Cov.: 34 AF XY: 0.00119 AC XY: 862AN XY: 725132
GnomAD4 genome AF: 0.0152 AC: 2311AN: 152080Hom.: 71 Cov.: 33 AF XY: 0.0144 AC XY: 1071AN XY: 74350
ClinVar
Submissions by phenotype
not provided Benign:2
Benign, criteria provided, single submitter | not provided | Breakthrough Genomics, Breakthrough Genomics | - | - - |
Benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Dec 31, 2019 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at