20-37802913-G-A
Variant summary
Our verdict is Uncertain significance. Variant got 3 ACMG points: 3P and 0B. PM2PP3
The NM_030877.5(CTNNBL1):c.1078G>A(p.Ala360Thr) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.00000137 in 1,461,858 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_030877.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 3 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
CTNNBL1 | NM_030877.5 | c.1078G>A | p.Ala360Thr | missense_variant | 11/16 | ENST00000361383.11 | NP_110517.2 | |
CTNNBL1 | NM_001281495.2 | c.997G>A | p.Ala333Thr | missense_variant | 12/17 | NP_001268424.1 | ||
CTNNBL1 | XM_024451947.2 | c.997G>A | p.Ala333Thr | missense_variant | 12/17 | XP_024307715.1 | ||
CTNNBL1 | XM_011528917.3 | c.748G>A | p.Ala250Thr | missense_variant | 9/14 | XP_011527219.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
CTNNBL1 | ENST00000361383.11 | c.1078G>A | p.Ala360Thr | missense_variant | 11/16 | 1 | NM_030877.5 | ENSP00000355050.6 | ||
CTNNBL1 | ENST00000628103.2 | c.997G>A | p.Ala333Thr | missense_variant | 12/17 | 2 | ENSP00000487198.1 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome AF: 0.00000137 AC: 2AN: 1461858Hom.: 0 Cov.: 31 AF XY: 0.00 AC XY: 0AN XY: 727226
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Sep 30, 2021 | The c.1078G>A (p.A360T) alteration is located in exon 11 (coding exon 11) of the CTNNBL1 gene. This alteration results from a G to A substitution at nucleotide position 1078, causing the alanine (A) at amino acid position 360 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.