20-63861682-C-T
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_080622.4(ABHD16B):c.142C>T(p.Arg48Trp) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000444 in 1,530,078 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R48Q) has been classified as Uncertain significance.
Frequency
Consequence
NM_080622.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0000593 AC: 9AN: 151870Hom.: 0 Cov.: 31
GnomAD3 exomes AF: 0.0000306 AC: 4AN: 130778Hom.: 0 AF XY: 0.0000140 AC XY: 1AN XY: 71478
GnomAD4 exome AF: 0.0000428 AC: 59AN: 1378208Hom.: 0 Cov.: 32 AF XY: 0.0000456 AC XY: 31AN XY: 680160
GnomAD4 genome AF: 0.0000593 AC: 9AN: 151870Hom.: 0 Cov.: 31 AF XY: 0.0000674 AC XY: 5AN XY: 74212
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.142C>T (p.R48W) alteration is located in exon 1 (coding exon 1) of the ABHD16B gene. This alteration results from a C to T substitution at nucleotide position 142, causing the arginine (R) at amino acid position 48 to be replaced by a tryptophan (W). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at