21-44424868-A-G
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_003307.4(TRPM2):āc.3566A>Gā(p.Gln1189Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.99 in 1,604,358 control chromosomes in the GnomAD database, including 786,812 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_003307.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.972 AC: 147671AN: 151952Hom.: 71858 Cov.: 29
GnomAD3 exomes AF: 0.975 AC: 227429AN: 233350Hom.: 111014 AF XY: 0.979 AC XY: 124334AN XY: 126982
GnomAD4 exome AF: 0.992 AC: 1440631AN: 1452288Hom.: 714908 Cov.: 50 AF XY: 0.992 AC XY: 715994AN XY: 721624
GnomAD4 genome AF: 0.972 AC: 147776AN: 152070Hom.: 71904 Cov.: 29 AF XY: 0.969 AC XY: 72044AN XY: 74322
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at