22-50739879-G-T
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BP4_StrongBS2
The NM_001097.3(ACR):c.467G>T(p.Arg156Leu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000602 in 1,612,522 control chromosomes in the GnomAD database, including 2 homozygotes. In-silico tool predicts a benign outcome for this variant. 15/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001097.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ACR | ENST00000216139.10 | c.467G>T | p.Arg156Leu | missense_variant | Exon 3 of 5 | 1 | NM_001097.3 | ENSP00000216139.5 | ||
ACR | ENST00000533930.1 | n.507G>T | non_coding_transcript_exon_variant | Exon 3 of 3 | 1 | |||||
ACR | ENST00000529621.1 | c.467G>T | p.Arg156Leu | missense_variant | Exon 3 of 4 | 5 | ENSP00000435120.1 |
Frequencies
GnomAD3 genomes AF: 0.0000394 AC: 6AN: 152136Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000120 AC: 30AN: 250878Hom.: 0 AF XY: 0.000170 AC XY: 23AN XY: 135598
GnomAD4 exome AF: 0.0000623 AC: 91AN: 1460386Hom.: 2 Cov.: 31 AF XY: 0.0000991 AC XY: 72AN XY: 726260
GnomAD4 genome AF: 0.0000394 AC: 6AN: 152136Hom.: 0 Cov.: 32 AF XY: 0.0000673 AC XY: 5AN XY: 74324
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at